NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209382_10000513

Scaffold Ga0209382_10000513


Overview

Basic Information
Taxon OID3300027909 Open in IMG/M
Scaffold IDGa0209382_10000513 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64059
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (54.93%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002324Metagenome571Y
F084700Metagenome / Metatranscriptome112Y
F101835Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209382_1000051316F101835GGAGGMSEGCGFEAAVLRAAQDDRWTDSLRNHLLECEDCVATASVAPWMTRFARISDRERKLPDPQIVWLKAQLLQGSADVARVSRPLNFLQLVAYLVVAGGWAALLTWKWDMVQAWVKGLTPTGMVQNMATGQSLSMSFLALLIVLATMTVSLAMHTILAEE
Ga0209382_1000051357F084700N/AMSERVLDKLADILFATDEILGLIRVEERMPDATTVFIETSVQSVYDQVNELMKRLAD
Ga0209382_100005139F002324GGAGGMGEIRLFQICYEGDLTVEVSHVLRRLGAEPNFDQSWQVFLPEGRHAAPLVRYLRAQLGADARLLVACSQFTTMRDFLLVRHSLTPGADYSELHDALQRLGTVVALPFESTFVIQSLYANEIRTDVHTLGLALGELCPDESLMVTGISHDWAYSDSGVSRMFIGDAYEEAQFKSF
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