NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209382_10006036

Scaffold Ga0209382_10006036


Overview

Basic Information
Taxon OID3300027909 Open in IMG/M
Scaffold IDGa0209382_10006036 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15634
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054337Metagenome / Metatranscriptome140N
F085478Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209382_1000603614F054337GAGMMSIKIKFCLMIYIVIGSVMFINSELLKEAIAQNSIDSNLSNTNDRESKQVNNLTTDKDHGLATLPLVINITKNSNATETVIDFIINQVNSSVVDISVLEDLAKDRIPLLIDTLKNTNASSIAAEYVINSTKEGILTNSTDN
Ga0209382_100060362F085478N/AMCLMKNSISCPSDTSGYKIKKINKIIIVYTSFLLITFLFTILYFHPTEVYSQISNIGNNNQIVKDPEKEVPSLVISSGEKEVEMEPFIYSQINFSNNKVKESQVNESQHNIVTKIGSLKLYETQSDIDTTLTLKHGDKLSLSYEKQPLTTKAYLIDYDTENESEISPIKQIDFSTFSIPNNSPVGLKTLEIRSFYDNNEQVTYTTSVFVEGSNPEIATSNIENDNKEKDNDN
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