NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209382_10118544

Scaffold Ga0209382_10118544


Overview

Basic Information
Taxon OID3300027909 Open in IMG/M
Scaffold IDGa0209382_10118544 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3088
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000803Metagenome883Y
F091538Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209382_101185444F000803GAGMILIADLEDFVHDHRSHGSMIADATPPAWNGYLLTVACPCGVVFERWIAPLDAELDLIWAASLN
Ga0209382_101185445F091538GAGMRRSILRAALVAIGLVTFIFGDLTGDHRARAGGVAIVGAAILMAVAAWVLRRPEKAAELDLRDWATYLAQSGEGGLLVVRSDQAQLYECAVRAFGADRVFYDRRQGERRRAVSGATIERRQSKRRERVEADFEIKAFGSAWINLKTVQ
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