NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209382_10191305

Scaffold Ga0209382_10191305


Overview

Basic Information
Taxon OID3300027909 Open in IMG/M
Scaffold IDGa0209382_10191305 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2350
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000461Metagenome / Metatranscriptome1108Y
F000596Metagenome / Metatranscriptome999Y
F001751Metagenome / Metatranscriptome642Y

Sequences

Protein IDFamilyRBSSequence
Ga0209382_101913052F001751GGAGGMLEMTNENFARLLRGLTIAVGNRRNRILLYQFLAAEIRALHCSYGVGDDQSYKRALTFLENCERYTLRSLVRTSAKHHAEVTVDHAKRVFSRALKKLDSSQGHNPTLRAMMVYLLKQEPLEANSQPSGNT
Ga0209382_101913053F000596N/AMNARTLGIICALLAVMPNLIGCESSRSQDYQFEKQVKRAQECRQLQDKLVRDQPLTPERGEEIANTMAGAGCTARLPSADAGVPPRFPAQR
Ga0209382_101913054F000461GAGMGNLLFWLGIGAAQKGAGSKPIERRPWIVSFVVGILIALLIGAGAFVLLVSQQ
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