NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209382_10291836

Scaffold Ga0209382_10291836


Overview

Basic Information
Taxon OID3300027909 Open in IMG/M
Scaffold IDGa0209382_10291836 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1841
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015513Metagenome / Metatranscriptome254Y
F061198Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0209382_102918361F015513AGGAGGMARRHEKTTAGRIFENILFLEEVFGDKADADIPDIPVLEWAKCFELSHPRSLRATRGSRKSSQRNRAGELSNY
Ga0209382_102918362F061198AGGAMRLLISVLAILTTLSSTPAFAQVKKWVDEKGIVHYEAIGTGRPTTLNADQPKPNARRPLERNHAGLTLGDDEASFKAAQKGDYAGKSGPDGNYYRYTGTLPEGAINMGALFVASRLALMMIDYRDFGLGGWEQLVKETTEKYGQPMGEGRTAGWNDRATALSFKHDLSGNIMITLEDLAVMRKLRCQSFKEINRLITSSKSKTCPCFRCC
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