NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209698_10157275

Scaffold Ga0209698_10157275


Overview

Basic Information
Taxon OID3300027911 Open in IMG/M
Scaffold IDGa0209698_10157275 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1860
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Clearfield County
CoordinatesLat. (o)41.170727Long. (o)-78.4726Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003832Metagenome / Metatranscriptome466Y
F025325Metagenome / Metatranscriptome202Y
F058360Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209698_101572752F025325GGAGMLADSPKQAKKTWEELLAAATSENDPEELGAIMEEIFAALEERGQSTSPPQNLAGL
Ga0209698_101572754F003832N/AMNSTARHPAIEANWPPEEGQAISFTSSAGSETAILQEVRWGLVWRDFILEDGRVIPEHRVSGSPQPQVWRNISEITDDEREQCEERLLSMAEARMDPRERDQFFWAELNQYLAYTYLRFKQAEINQPGAGL
Ga0209698_101572755F058360N/AYGNGQEAIVSLVKSTAYNAVTLVWIGYLRHQRHLVPRVEPVMSTAGPGFDLVTSTGVPHPDAGFMLRVEQAVDRVLSRSDWPRPAADGSRIVSRKPTPEERN
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