NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209698_10216342

Scaffold Ga0209698_10216342


Overview

Basic Information
Taxon OID3300027911 Open in IMG/M
Scaffold IDGa0209698_10216342 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1543
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Clearfield County
CoordinatesLat. (o)41.170727Long. (o)-78.4726Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003000Metagenome / Metatranscriptome514Y
F033709Metagenome / Metatranscriptome176Y
F083628Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209698_102163421F033709N/AGQKHTFLFKYRDGKVLLDDDKPEQSQAQPSSESCAETDIAAERAVPAAVVDEAVEFLPSTFSDEDASDVPWVM
Ga0209698_102163423F003000N/AMKANTQLGGMHDRLTDFHLRNRKERIGDVLQMWVEDPLKPRDEQGRLRVNPILLFLVVVFALVFGIFVVFSMVQS
Ga0209698_102163424F083628N/AMTAENEYRLGRRAFHQNQEESVAVAIAIVAVCLLAGGSYILVSRFHLRSAQLVEGSLYAFFVLIAGTA
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