NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209536_100230380

Scaffold Ga0209536_100230380


Overview

Basic Information
Taxon OID3300027917 Open in IMG/M
Scaffold IDGa0209536_100230380 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2322
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026258Metagenome / Metatranscriptome198Y
F028350Metagenome / Metatranscriptome192Y
F035125Metagenome / Metatranscriptome173N

Sequences

Protein IDFamilyRBSSequence
Ga0209536_1002303802F035125AGGAGMETAKKKITVRFVVEQDFEVEVRDSDLEMGSFYAIGDVMVSSGFDQWDLLTHENVFDNPVGDMRPVHDSHWSDANLYNLGLHSEYIQPWLFEGQTDKDPYAETEDEENDNA
Ga0209536_1002303805F028350GGAMIQRSGRINPIAKAMLQTSRRRSQVVPDKTKYNRKKEKDLANQNRSNEELENPKG
Ga0209536_1002303806F026258GGAGMLPDTQHNREQALEHMYGMPKEWLDELLDDWREPLMGGLTMLAMSMLSDAQECIAVGQDNTARQYINRAKYVIKHMDT
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