NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209536_100292002

Scaffold Ga0209536_100292002


Overview

Basic Information
Taxon OID3300027917 Open in IMG/M
Scaffold IDGa0209536_100292002 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2040
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F007026Metagenome359Y
F019817Metagenome227Y
F020342Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0209536_1002920022F001807N/AMTVLAIENTSFTDTHVTVTAVVDEMRLLYRATYLDPEEWAPALCQTTIELDPEEPIPLDEDGFCSYLDDLDPQWQLLDTSIGDPD
Ga0209536_1002920023F020342N/AMSSITDNITLFDRINLAVCARRRAAAHLLDATRFEGEYDTARLWMKYRLVKYTTYSYIDE
Ga0209536_1002920025F001165N/AMTESNLPRIPDSMDMQRLQAMQLVAKMKESADKYGVGFIGGFVAPNGEKFVMSNMDDDETQALLPDNLK
Ga0209536_1002920026F007026N/AMPYSKYPTIDWKSNEYHKLQEAVDLLKAVLERESKRSCTCEHLVPGDGEVIEEVIAMLEERIDYDPTPNDPGEPPITLDEMHTAAWKEHQEMHR
Ga0209536_1002920027F019817N/AMPATATPALTLNQRNLYAYFLNHKEKHSHTPCFVPKLPAQSSRLEQYLQALNKLEQYELIRVDRTSDNYTGWIMLEPKAA
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