NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209536_100426125

Scaffold Ga0209536_100426125


Overview

Basic Information
Taxon OID3300027917 Open in IMG/M
Scaffold IDGa0209536_100426125 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1658
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006971Metagenome / Metatranscriptome361Y
F058532Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0209536_1004261251F058532N/ARRQIVKDEYDLFDNKARTSWEFICNYMNWDIVKNKEDYFEDYVCKIKGIYYPMELQVAAYWHNHSLDKLSNFYISKSKIDLLREYVNKYINVEAGCVFMNCVPNKFATINIKNISDNYLMQNEQGEFYYKIPINEKINYFETDLIDAKCDCLDNHLEIMQRSKGRMNHLEKDYNIRGFNGICCR
Ga0209536_1004261253F006971GAGMNYRGIEFKKHQRVKFVIPTDDRIIDPQTDKVLWRYGTLQFFAKKSISAWVLEDGAKENVRVSLFCILPVN
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