NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209536_102160491

Scaffold Ga0209536_102160491


Overview

Basic Information
Taxon OID3300027917 Open in IMG/M
Scaffold IDGa0209536_102160491 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)664
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.640199Long. (o)-77.109447Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008684Metagenome329Y
F058908Metagenome134Y
F064091Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0209536_1021604911F064091GAGMTEYQKLESLHWGLDELIQGNQLTDHELKTLQSFVEDIREKHLTES
Ga0209536_1021604913F058908AGGAMDKQQAIKYLYQDWLDYKNYYFKIGFEMKESFIEYLEREIPEYIESEEV
Ga0209536_1021604914F008684N/ATMTNKNFELACELADDLYFKFMDNLSDDIVSEFVIDDKDNIGCTKNTEKGSDLYWQIEQTIKDVLDRKDQ

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