NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208312_100042

Scaffold Ga0208312_100042


Overview

Basic Information
Taxon OID3300027931 Open in IMG/M
Scaffold IDGa0208312_100042 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_9_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10209
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066921Metagenome126N
F094112Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208312_10004214F066921GGAMGEENPQVSPKAAYNRAVRAEEKAENALNEIASLKSSIDELVRTLKGASQPIQAQSLRPGQMIHTIISEDDEGITEEIVCPTCGTRELRKIPAKIEVKEKPVVPENYIPAPHSVSEAISLLESLHLPDGRTIFESDKFWSKINEYAQKYVQNQKKR
Ga0208312_10004221F094112GAGGMSNIAIYKRGYNFMTIAKDVSSKISLNFGLTTYNYPILAIFVYISNTSSPASGYIKATITPLDEVIIGGYGYSPTISYFIDPHKGAMYIPLVTYEYINITITPSAGANLVYDAFLYDWMGETNVDVN
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