Scaffold Ga0208312_102705

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208312_102705

Scaffold Ga0208312_102705

Overview

Basic Information
Taxon OID	3300027931 Open in IMG/M
Scaffold ID	Ga0208312_102705 Open in IMG/M
Source Dataset Name	Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_9_15 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1548
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, USA
Coordinates	Lat. (^o)	44.7315	Long. (^o)	-110.7113	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050482	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208312_1027052	F050482	AGGAGG	MNSKTMEDELEKMGFKVLNVKDRFPTHTYHIYAILKNGYALSISQGIGVRSSIGKDHYTQSETFEVALGRYVNNVFYLVYEGKWKDGVLGWQTAENVIELAKSVKRLRS

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