NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208429_100209

Scaffold Ga0208429_100209


Overview

Basic Information
Taxon OID3300027932 Open in IMG/M
Scaffold IDGa0208429_100209 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8903
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033508Metagenome / Metatranscriptome177Y
F047176Metagenome / Metatranscriptome150N
F065947Metagenome127Y
F072527Metagenome / Metatranscriptome121N
F084462Metagenome112N
F099550Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0208429_10020911F072527N/AMSQQPNRLAELLQQAVLAFGADRVQVLQKIRQYIAQTDCTVLNVQLQQITNINMLRMLQAAGVPQCIQATFYLQINKALKGVTP
Ga0208429_10020913F033508AGGLAAEAAAAPFVSPTTLRRVTGSSTTQLTIPARIGYRHVLYDVFVTGPTAYAYADVSVGTRVFLRIPFQAANCVTVNFPGAKVNGKGFLWGLSDLFGAEHLPNAAEDEDINITVSSPAVRIDAYYAEIKPEDVSSHSVNGGSDAKIKPFIELLDTLVATTGNGINVLNENMPTGLGLLDNNGRVKATTQFTLLTAFADYTSSGTNFTEYSRLHIFDEDEELFTPLNHEGLFIDYTVAPGDLYMNWPYRQYFKPDQPYVFKPNHQVSLKADVAAVTGLGSTLRVALIGIRERLG
Ga0208429_10020914F047176GAGGVSAMATRIFRFYITLNAGQANNGAQGNPSPFTVTAPSGINRRIVEIRPWGTQPFEYQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHEYSVVMTNNGTATGTFGVDLVVEESALTGGGAAAPAAGGA
Ga0208429_10020917F084462GAGGMSVAKDKKTVEVLGVAEVPAIEPSRLGQFDTQITYRVDPLHVFTFRVPQTNLTAQQIADYVKKDYAKRKGIVGMQVEV
Ga0208429_1002093F065947AGGMLPSNHTFSIAKIRGVFKRKRNNELPCVAYGTGNLSRKIGRGYFFYDYDTSDEKEVERFRKYVQHTFYVAYVLFRTKHGVMVMSTLTFSFEQLRKYYDQFQAQFPSDYLWDIPLFLRLSEKWDWRTGAVVSPMPAIIDNPKNTDIYRLVREDMYPKKWYRTSD
Ga0208429_1002094F099550AGGVYQITDEIKKLLATKHKSMQIVWVPLGVLDEIAQIAEKLHLAINQTIIVLAIHALRGAQPQPPDGTAHFLCPICLQSFTSPEDFLTHLKGDENVAIKPHI
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