NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208429_100344

Scaffold Ga0208429_100344


Overview

Basic Information
Taxon OID3300027932 Open in IMG/M
Scaffold IDGa0208429_100344 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7091
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018963Metagenome / Metatranscriptome232N
F033507Metagenome / Metatranscriptome177Y
F040183Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
Ga0208429_10034411F040183N/AMKIKYPFPQRIHYLTVLGHYLTPNTTIVASGANTGPLTANTVCDFVQTPNHKELAVNLTIQAVSGTFSTGQGLTAYFDVLDPVESQNVNVNSSERPPVLELKLNSTAITTAPTTIRLIIANGVATVWINGASTALGNVNVPSIWQVRFAITGTSPSFSIVGTYEARE
Ga0208429_1003443F018963GGAGGLDTLGDRPVGAKLMFPYVRGEDGSVTDTLIMSFRTGRIVHSKLSVNKYGHGYRAYTLLPANYLMYEAYRTGRGRASIKVSVIDVSPNPLSPYRVKDIWVMYEGVSPVTLLEDLPGNIRVIIEGNSGELPLYEYLETEVPK
Ga0208429_1003445F033507N/AMVRSNIAEVVASTTSSGSGGTLTVNLSVTSGSGVTQIDGVYYLNPEANGYYTCGLQMNNQSVRYSWTLHVSATPTSLANGATVFVEVTYFDTYPGKPYYSETYPFTLNSNGQDSGEFSVCMVPSTIFPESSVGVKVVGVKSATDQSIPYTSSGITIIPQ
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Institute for Fundamental Biomedical Research
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