NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208429_101041

Scaffold Ga0208429_101041


Overview

Basic Information
Taxon OID3300027932 Open in IMG/M
Scaffold IDGa0208429_101041 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_virus_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3765
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042426Metagenome / Metatranscriptome158N
F061049Metagenome / Metatranscriptome132Y
F063847Metagenome / Metatranscriptome129Y
F077501Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0208429_10104110F042426N/AMEGNVKRLMDLPLKSIYTIGQGETKSGFEVYYLFEYKSGNFSEKADNVYMIYSTTVLGEWLTENFDKLKKAIFELEIEFRDSQYNKKIAVPVRVKKIADKPRAPVQVEEEGF
Ga0208429_1010413F077501GAGGMNKKLISLLILFSFLIPFASASNSNLSITFIPENINQNYIVNIHDLNNSFNVTYQFNGVSAITNLIPGVYYIKITSKNYNTLNIKLNLTQNITLELFFNSNIIGYGIQNYDYLLFTIMLIIALFGILIVMVYYMKGVKIK
Ga0208429_1010418F063847AGGGGGMRFKKYVFCYDQYSYLQDRIITHHISIYAKNIKEAESKLEKLGYRDFYLKKKKRKVSY
Ga0208429_1010419F061049N/AMSIFVIRFEKDNLVIREWVLKGNEELEKALIEMFDIDFRFINEIRGFEE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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