NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208549_105833

Scaffold Ga0208549_105833


Overview

Basic Information
Taxon OID3300027933 Open in IMG/M
Scaffold IDGa0208549_105833 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2558
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077501Metagenome / Metatranscriptome117Y
F092366Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0208549_1058333F077501GAGGMNKKLLSLLILFSLLIPLVNASSNSNLSITFIPEGMSQTYYVNIHNLNNSFNTTFEFNGIGEVTNLTSGIYYIKITSRNYNTLNIKLNLTQNITLELFFNSNIIGYGIQNYYYPIFTAMLIIALFGVLITMVYYMKGVKIK
Ga0208549_1058335F092366AGGAMKAIYVLFIVLLFLIPFSFNNSQASLLSGSSLINEKINTHIQIYVLNLTLPNAWGVYGYYNYSINNKNYSIKISNITDNYYLDLNISYEISISLNSTLYYNISLFAYKLQDYIALNHINYKGKLNISITQKEYNITLNASAIQFENVNNFYYFWSEYGYKIIGSIII
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