NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208151_103134

Scaffold Ga0208151_103134


Overview

Basic Information
Taxon OID3300027937 Open in IMG/M
Scaffold IDGa0208151_103134 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3715
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033508Metagenome / Metatranscriptome177Y
F047176Metagenome / Metatranscriptome150N
F084462Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0208151_1031344F033508AGGVLYDLFVTNPPAYGYADIAVGTRVFIRLPFQAANCVTVSNPGQKYQGKGFLWGLSDLFGAENLPNAAEDEDINITLNAAATRIDAYYAEIQPQDVSSHSVNGGSDAKVKPFIEILDTLVSTAGTGINVLNENMPTGLGLLDISGRVKATTQFTLLTAFADYVSSGTNFTEYSRLHIFDEDEELFTPLNHEGLFIDYTVTQGDLYMNFPQRLYFKPDQPYVFKPNHQISVKADVAAVTGTGSTLRVALIGIRERLG
Ga0208151_1031345F047176AGGMATRIFRFTISLAAGQANNGASGNPSPFTITAPSGINRRIVEIRPWGTQPFEYQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHQYSIVITNNGSSSGTFGVDVVVEESALTGGGAAAPAAGAA
Ga0208151_1031348F084462AGAAGMSVPKEKKTVEVLSVAEVPAIEPSRLGQFDTQITYRVDPLHVFTFRVPATNLTAQQIADAVRKDYAK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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