NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208151_108334

Scaffold Ga0208151_108334


Overview

Basic Information
Taxon OID3300027937 Open in IMG/M
Scaffold IDGa0208151_108334 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1565
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076263Metagenome / Metatranscriptome118Y
F080247Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0208151_1083343F080247N/AMIVWGKVIDCLLDADVNYLNGELFGNPLRIKGKFLVFGNLLIFEQTVKTPLSEEKTIQVCSPIDATFMTYYQGMVAIMSFYFRDRDLYANISLTDPETIKSFINMSSFYKKYGISIPNLLDKIMYRKVPT
Ga0208151_1083344F076263N/AMVSLEDLSAILDDLEDLCARLPEGVTFHPTLELRRNYANEEATYIKFDCRNHKYILTIVRTGVAKTMKVSSREELIRRIFPEYSPGYSGSY
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