NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208151_109424

Scaffold Ga0208151_109424


Overview

Basic Information
Taxon OID3300027937 Open in IMG/M
Scaffold IDGa0208151_109424 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1399
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F030159Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0208151_1094241F008949AGGAGGMSSQTVQLGTQTITPKVQDMGNTYYIEFQVNITKYSNNPVNHTIVVKFVCNKYKQVPSANPLSSPTVQTVQKTIQECVDEWYNQHKSVYEVA
Ga0208151_1094242F011097AGAAGGVIRDIPLATSGGTDPFTGLPVGGSPITGNGGNGQLLRFHPNYARLMIFITGLSGTSPSIQFTIGSYYGSNFYTLPPITSPQYVYIIDNENKTIITYLNTNAQVLQQVELPYNIFLNGVQVNWSVAGTSPSITAYIHFEFEDEEEGEE
Ga0208151_1094243F030159N/AAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYIDGIAIYIDKSVISPKGKTLVTLPPLIFGQTSPGGSYYVIAGDYGAGSVYHGVVAYTFGKKYARVYLNINAGNGAFVNIYTRYRSRTAPDLQQMYGNSPNLNSIYFALVERNFGTLVYATDYSYNMPYATDYPRTSKFRVDGQVLWVIIKQSSSPVFIELEGD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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