Basic Information | |
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Taxon OID | 3300027938 Open in IMG/M |
Scaffold ID | Ga0209866_1028798 Open in IMG/M |
Source Dataset Name | Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T3_30-Apr-14 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 726 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida → Stentoridae → Stentor → Stentor coeruleus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River, Washington | |||||||
Coordinates | Lat. (o) | 46.372 | Long. (o) | -119.272 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F051728 | Metagenome / Metatranscriptome | 143 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209866_10287981 | F051728 | N/A | LKALLDKAVRRTLRDATERILGDGSKVKGAIKKIYSAMQRMPKVALEKWRKYLQGLKDKSFFDNLRSAKLMNCLSRIPTRRTRDATQRILGGGNKIKGCLQNLVNGLKNIPRNALKTWRKYVQDVKDKKLFDGARSAKLQISLERLQRRTLKEAHERIRGLMFASPAVKAVIKRMDGLLKRKPKQAFDKWRKYVQAVNNKEILDGVKSQKLKALLDKSVRRTLRDATERILGDGSKVKGA |
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