Scaffold Ga0209860_1020850

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209860_1020850

Scaffold Ga0209860_1020850

Overview

Basic Information
Taxon OID	3300027949 Open in IMG/M
Scaffold ID	Ga0209860_1020850 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	875
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location Name	USA: Columbia River, Washington
Coordinates	Lat. (^o)	46.372	Long. (^o)	-119.272	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F102372	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209860_10208501	F102372	N/A	GGDEGLTLIFLFGRGGPLGALTVLVALVVPVIGLTAQRDPKSFETINEFVTRGWAFELGTSLTDLKAVGKVQREVVSTVKNRHVENQIDEIRELYYDGLYIRAYFPGGDHKRFLLQEVEITSARFRVKHGLNVGTSVAELKAVLGEPDEIKGDVYSYSGETDTVRFVIKSGVITKVKWELYLD

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