NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209749_1000051

Scaffold Ga0209749_1000051


Overview

Basic Information
Taxon OID3300027958 Open in IMG/M
Scaffold IDGa0209749_1000051 Open in IMG/M
Source Dataset NameBioremediated contaminated groundwater from EPA Superfund site, New Mexico - Sample SAE3-47 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)228179
Total Scaffold Genes205 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Tetrachloroethylene And Derivatives → Tetrachloroethylene → Unclassified → Bioremediated Contaminated Groundwater → Bioremediated Contaminated Groundwater Microbial Communities From North Railroad Avenue Plume (Nrap), New Mexico

Source Dataset Sampling Location
Location NameEspanola, New Mexico, United States
CoordinatesLat. (o)35.992Long. (o)-106.0797Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040985Metagenome160Y
F041560Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0209749_1000051114F041560N/AMLSILIGDQSLDLNDDFSVSLNLKSPLFNDVGDYSFPFKVPSTARNVSILGWKNRIASTRSIYETFEGSIRWNGMVLYTGQIKIKTAGEKTFEGTLYINKGNFNFEVKDIFLNRVDLGMMSFASDQQAVDYFNWSLTHFYPEVDFSMPEISNPTFYDPPATNPELMSYNYIFPDGWLRKYTTDGQCRTILTPFLYLKFVLNKLAEIFGYRLQDEFFTSSIELSRLVVYNSVSLSEVLFGLQKLYYCRLVPNVKVSEFIAGLEKWFNCSFHVDTRQRVIRIVGNKEVLLRSEIVEFSKNILSLTQEIPEQITGFRFLLGPDAGDMAYQAQLDAEKGITEMIKGAVQHFSDIPPYPFTWLGDIYYIVDTNTWWQLAVNPYTFLIEWQQLPAGPMLTDKFFYKWGDEKNKFETIFSSLPDKYISVNCGNLGADYQKITPRLFWVGMAGGWGTPVRLRGFANNSNFSLRYPGPNGLFNLYWKDWVNWIMDDRKSVMIEKQMDFIELKNLDFTKRYRINGINYLISEISVTLNKSSIKSAQLKCFTSP
Ga0209749_1000051115F040985N/AMIDITESPNFISFAGNPVIYEACSDSYLISLGSRASFELVVSAVDTSIGHSFKLQFAGKTLEFKTAGLTDFDGLLFEVGSFGQTFNDFANSIYQCFLENYDIQKYFNVTLDGPGTSNRKIHLQAKNSGTDGSIVFSNVNVIGVGQGVNTPGTDDQYQDFFGILCLVRDSANNPIGEDIKPADFIGCARFDISDYIQSKFTAWEMQRFEFPELSGNVKSHGWDYLLKYRISFAESIAGNVKGLQSNGWKYALAGGLNHELLTSLNEKYLEYFSIAANKQKFLSWLPLAKYSRSGVMEKLFFLFQDNPSAVQYRMVVIVNFTDGSHKVINATPQVVYPAFSVIEFKVGFDHLDLVNVQPGKVVRSWEVFLMDSNDDYLSERRVFNNDSRVFENEKVFFYRNSFSAYDTFRFLGKSELNLEYERLFGSIVREEKYSFFNAPAKQFSAKETEICKANSGWISLEEKNCLRELLLSLEAYEQIGKELFQIVVKSAKITQFLKDGEYLYNLEIEYERSYQNSFFSVHVPESSANPVILPQPLTWDNIEVSFDDMEITFDQIEY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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