NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1000344

Scaffold Ga0209400_1000344


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1000344 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40334
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (86.15%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030660Metagenome184Y
F043220Metagenome156Y
F057118Metagenome / Metatranscriptome136Y
F057144Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100034417F057144AGTAGGMTAIVGVQGKGWAVLAADSMTTYTDRPYVAKGCEKIVKVGEYLVAVAGDAIAGDILNNLWQPPKVIKTQDPDRFMMTKVLPSIKQALTSSGYDPAPKGKNDDDAGWDALVCFNGNLYQVSDDYGYMRDDRGLYGIGAGGGLALGALAIMEIEIKTHAKATGAAKKAVNIAIQYNVWCGGTVHTKTQFTK
Ga0209400_100034424F030660GAGVLWIGQTMSGDDVAFDFMTEHEIAEIIATEDIFQVDMSDINDLLEDVASDSDYE
Ga0209400_100034425F043220GAGVSKSDVDYANEIILTLSRDELEVVRESLRQFSMYNERHGYAGRAKTSDELRNKIVNIILDSVRHKLDTPTVSVLK
Ga0209400_100034431F057118AGGGGGMEIKRYRIEVRTPATLIYYVAEYDIDTAIGLALDAPYQEWEVSEFDMPADTDVIAEETRL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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