Scaffold Ga0209400

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1000346 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027963 Open in IMG/M

Scaffold ID

Ga0209400_1000346 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40187
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (10.34%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

40187

Total Scaffold Genes

58 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (10.34%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004839	Metagenome / Metatranscriptome	421	N
F010541	Metagenome / Metatranscriptome	302	Y
F015997	Metagenome / Metatranscriptome	250	N
F018511	Metagenome / Metatranscriptome	234	N
F031407	Metagenome / Metatranscriptome	182	N
F031483	Metagenome	182	N
F034112	Metagenome / Metatranscriptome	175	N
F051740	Metagenome / Metatranscriptome	143	N
F052398	Metagenome	142	N
F060725	Metagenome	132	N
F090088	Metagenome / Metatranscriptome	108	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100034622	F052398	N/A	MNLPAIAMTIEEKIQDIQLVIDNREKRLFKTGIVESLPKINQVVKQILPLYGIEASPEHLVEVTQFITTYKLIAVDEIKLAFEKFARQELNIDDHKLYGKVDLAAIGRILTAYINWRHKVYFTVDMEDEKKRAKLQEQERQVEAKRKFYAEFPEMLIGFKGESYEDVPVYWYDAAMSAGLIGYAEGEKRAIWEEAQGIAKKQKIQADSYIDFKTQLHRVEEEGKKRAIIIAQKLAVWRIVLNRI
Ga0209400_100034627	F031483	N/A	MNILKGRVKYTAGKVFEGQYGPSINAAITLDNGTDIRVYGKPDDNKLMALKKDDAVTIIHDGKSYKVAFDMVTANDLPEKVQTPTEQSEWIPPIVQHAANVVPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKYF
Ga0209400_10003463	F034112	AGGAG	MVIFNIGNKQIKYNYPETASDITLEQYIYFAKFLLPEHPKTELEAIQYMNERDAVYQKILPYAKKLKVINKDAFQIDVVCDLGKILQEQEVKDNVRRFLPPLIDQWNTLDKELTTRLEIMDEVWEAKERYPYMAKVVNYFTGIPLEACFGKVADSLELKYLVYIYGKIMNAINTPAETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVKNGDPQGLLNIMAVLLKPLGEDYSDELFEQNKVDFLQMSLQTSYEVAFFLTKLSEKYTLDLQTSMLQRAMANLN
Ga0209400_100034632	F010541	N/A	MEKTIYSVMYFGNAKRYQDLCEEVAAYSKRHAVEKVYAKMRNEDYFPDDFFLWGGLVKDCDGNVIADANDETIEYDGGYFYAEPVMQ
Ga0209400_100034635	F004839	N/A	MEKNFTNTQFKWTFESISDNIPTIMLLTIILTYGVNAFLTAIFLPIDFWIAIIASTILQLGRFAVVFMDFLNPTKGRSPYPPKIALGATVIALIEVFFGLMEKYSGSEFITMFFFVGTIVCFGYLLEINFVNKGVEAYGLEEPKVIKRRKRRVVAKKVTEDSPKESKGYVTSFKTITL
Ga0209400_10003464	F031407	N/A	MTDKEKALIIIDLIEKITQEIIDKPMQRKKYLQMRGHLEKAVKLTGNGIKREWSRPPSLPIVSHAKAEPIPFVPKTTETNGDLLADNIPVVTKKARRR
Ga0209400_100034642	F015997	N/A	MSQLIQPSEVIAGGVARPTPADIRLDKSLISPHIQDAEFRWIVPAIGLTLYDSMVANKGTSTAFTSTSYQDIWDKQLKSFCANAVLYEASPYMVMQLGSNGLYTLDNEYGQNVGVEGLKFYQDTLLQRLDVKKKRIKDLLCNYSTPLTAFIPSAIGCPESTCYPDEEEITDIYNTLGIVL
Ga0209400_100034644	F051740	N/A	MIVREKSKLMIYVGNDPTGKAGILKKAIGNFTQAELRGWYNANPTSVSQHVIFTPEKKTYEPNKEDDSSSSEQG
Ga0209400_100034650	F018511	N/A	MKGNSIWGELAIRIPQEYKEQVMATVDRTYRVLSIDPSDMDYLFQIYNNFVNNYEPERRNCPACRTKVVGKMRQIVQFWRDEQ
Ga0209400_100034652	F090088	AGG	MEDKEALGKKVFLEFYSTFILDDEIEETGRVFYLAQKASIIHLNLVRGVLQNDEYIINMAYLKDVINKIKI
Ga0209400_100034653	F060725	N/A	MIKLFIGGQEVDLNQNEVNVTIDYSIENIELGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEVDGVPILTGKARLEGADLQAINSGFVAANFKVSLIGNNADWFADVGNILVRDLGWSTIEVSETTVKANYNPVTAEYCFILMKWKAWENETYILYNELTPAIFIWQILEKAFKDKGYQLNSIFKTDPFNRLIIPMGLNLDADYIKDFVNLRASNPSPSTFTKSAGENGTVDITFTDETTSPNFDTGGNYTGGTYTVPINALYELIAELNVTLTATIGDINQFAELILFFEVNGNNVSTYDLTNETSLNDSISLEFLGDLVANDTVKLRLRYENVSFNLSIAGSLSIVAEKEGLETGEIVNLQYIIPISWYARDIIADLTTIFNLAWETDVLNRQVYAYPKDDYTIRYRANSTGAASITSFDGFFKASNKYDLNVRDVDGSDFQVLDGYKSSQVLAYATDDDTTNKEEERRGVNIYSGGYNFPTDRFENGIEFIYTNFFAKAIHINDVTITTGGTYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRAGLDGKIRLFDETTSAASAFDFPAAFMVNYNDPSGADFNLSFSDEVTNYTNVMQGVFKTFHLQTYKRIELGKVYTTFAKWKPKDITQLSFRRKGIIGSSNFIIQSLEYNPKSNSPAKTVLLYDEKPNTNDLTKVVNTITLAGASPQSGTVTGSGSGLVGANGATVNIQLSYTPFLNSMTNVLVLAPNSGITQVSNTNANVLVFMNGQKLIPTVQYIISGSTIGINVDTHYDGANYEVVVNGVTKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209400_1000346

Overview

Ecosystem & Geography

Associated Families

Sequences