NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1000557

Scaffold Ga0209400_1000557


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1000557 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32342
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (72.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003080Metagenome / Metatranscriptome508Y
F003268Metagenome / Metatranscriptome496Y
F026214Metagenome / Metatranscriptome198Y
F027425Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100055717F026214GAGGMARNYKDYSYFENRPDVVRVFDDLDAYLNYCRIELCDFNPADLYRKDSAIYQAYLNSKRPRRPYQGNKPRFEKRRNDNFSR
Ga0209400_100055721F003080GGAGMNTAKDIADTLIHRAKNLQEFIVERDWALIPAGVVKYDIQHTVGEPARIFVHAMTQEEAERQVDDWFGESVE
Ga0209400_100055735F003268AGGMSQNNIPSNLPSVERLIQRVAVAEKSQQKDIKLSLQEARDLTAELAIITAKLGKTVQEIHQMLSEIRESTTNIDVKFDGGTF
Ga0209400_10005578F027425AGGMIKGLTGTCGVTVSAGNTALPYVGPNTSNPMTGMMRINGTEIEVFNGSSWQQLSTSYATVSLDQDILDTVQWARKKRDEEMKWKSLANDNKAVKIALDNLEQARQQLELTTILAREYETT
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