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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027963 Open in IMG/M |
| Scaffold ID | Ga0209400_1000605 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 31188 |
| Total Scaffold Genes | 45 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (62.22%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003049 | Metagenome | 510 | Y |
| F005702 | Metagenome | 392 | Y |
| F005846 | Metagenome | 388 | Y |
| F006138 | Metagenome / Metatranscriptome | 380 | Y |
| F008741 | Metagenome | 328 | Y |
| F009142 | Metagenome | 322 | Y |
| F019102 | Metagenome | 231 | Y |
| F026543 | Metagenome | 197 | N |
| F074559 | Metagenome | 119 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209400_100060511 | F003049 | N/A | MKNAKQIIGCRKAKKWEDTSGLGMIKFGKSRPDPTKYVKVDITYDEKAEKDLYECGMIALKHDKEAVIQYVIVKALTGYAKCKK |
| Ga0209400_100060514 | F008741 | GAG | MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCLPQYHSVFDLVSYVKAGSKGDIIDLEVWPNRYEEYRKSKRSWTDFVYSHPEIKDADKTNIILDKLDDKPAEGLPETYNLVAAFGNSQGFYRNPLDIITKARTDMGKDNFYVMTPPEIQIQGLSTYTAPSVSEMAKAIRGAKDFWAINSTPIILASVVRRGKPTAFFPQKNEWETDNIFDFEGMFRMD |
| Ga0209400_100060517 | F009142 | N/A | MNNSVQINVEDALENLLANIPNLNVYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEAFDSEYCSIFEAFYSETKPLFTKIQNNIVDTKVYTARITGQTPTIRTAKRAWQRGLKISLICTPSELDDGLRSLNFSQRQNSMYVAVI |
| Ga0209400_100060522 | F006138 | GAGG | MAAVTIGTQGLSFGLVGEAGIGLVQSFSEARNVEKNEVRNNLGDIVAIGYFNATTSYSLSVAITGSYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVT |
| Ga0209400_100060523 | F026543 | N/A | MTEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKESGEVQATFWFEAGAGAEAKAEMERPWSEMRSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATSEQRRAILKHL |
| Ga0209400_100060524 | F019102 | N/A | MSISLDEELNSAFISPEKEFMGEKLAPYTEGSRLLLLQVRDDNDSSIYFIWSFIYMHIQIAKSRKEAIKLAWNRDLFREKIMDFIEGKTEADRDIATQIVSSILDEAQKGRVDVIPAPHQPDLGNA |
| Ga0209400_100060536 | F074559 | AGG | MKAQNPWQKLLSEHIKDKFAPPQPEGYYTREQVSKLWQKSMNTTSRMLNQMLEQKKVEMKRYPFIVARKDHRVVRNLKIYKILPTKHPHK |
| Ga0209400_100060538 | F005846 | N/A | MTSFPLPARPQASAVPASHKEFAKRTSIEGKANGWRGLFHQKTGIGYNRHGKIASNHNLMVERLSNAGIKAPYIDCEIMGMRTKAGKGTIVVMDAFDPANPKPYAERMKDIEHLEAVTFDIPNNKLLRFVRLAHHKISSIWEEMNFQNNKAGEVIWEGFVMKSLDDGKYPYITNPNYCSPAWQKQRIRW |
| Ga0209400_100060539 | F005702 | GGA | VIIFLVVFFGLLILQGVRIFAKHIDQQNYDRRQFYLYVAAELDKMDKIVAEGNQPKKPKEPELLLPTKNWVGRN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |