Scaffold Ga0209400

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1000706 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027963 Open in IMG/M

Scaffold ID

Ga0209400_1000706 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28849
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (75.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

28849

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (75.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F006891	Metagenome	362	Y
F007747	Metagenome / Metatranscriptome	345	Y
F026867	Metagenome	196	Y
F033352	Metagenome / Metatranscriptome	177	N
F048158	Metagenome / Metatranscriptome	148	N
F048834	Metagenome	147	N
F081048	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100070617	F006891	AGCAG	VEVSADQVAELSERLALAREAIARIETRQTVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVFSTIWELIKRRISF
Ga0209400_100070623	F048834	AGGAGG	VAIPSVKDWAVALDAYVAGDREEVVPPGWYTKIEIAKQWGKSDVYTNKILTRMIKAGGAERKVFSIKIKISQRGGKIGHCRRVPHYRLRAIKTGKT
Ga0209400_100070625	F026867	GAG	MSLGRLNDIAMKLRQQNQALSLRQLGAAYGLGYVRIKQMRELSGFPLIAGKVIPSDFDQWRMIRTTGLSSLHREDRLRSAVGKARELKSRSDSRVSWRQIENSLKAAVSSLGLPEGNGSSDV
Ga0209400_100070631	F033352	N/A	MTDLMKFRLIENIEVMACRNSAERVVKALNRGEVEQAKDLARKHEIAWHITDREFQDLNQPHRNNDFCDDE
Ga0209400_100070636	F005502	AGGAG	MRMLLSFIALLGFTTTKLGNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEKQFKAMRLPKVAMVEVMK
Ga0209400_100070639	F081048	GGA	MSVKRLAWQIEILERAKKSLADGRVVVTRCRLDLALHIAKEMLKRAQTYQKRDLEKKK
Ga0209400_100070641	F007747	AGGAG	MKDLGKITFGKARPAPKQVLVDVTYDAKTAKALHAFGLKQLKKDEAAVIEYVIKKALEGLVKK
Ga0209400_100070645	F048158	N/A	MGRPVNHDVKRAMAATGKSRATVYLQRKKVEAQPLVKAKGGGLDVEIQRLEDLAASLGESAKDDTRADRSELISNYTKLVEALRRMKGDRPDIDQAEGTMVPVDEADKVLAGRDNALVPLLKGMAKRLAPICANRPAVEVEAEVENEVGQIMRQVEAAL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209400_1000706

Overview

Ecosystem & Geography

Associated Families

Sequences