NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1001037

Scaffold Ga0209400_1001037


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1001037 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23605
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (70.45%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006255Metagenome377Y
F007848Metagenome343Y
F016143Metagenome249Y
F017287Metagenome241Y
F037693Metagenome167Y
F086796Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100103710F007848AGGMKDFLGACLLGAVLGAMIAYGIPAKAQTVQMTNAAGYNVGTVQINGNTAQFVNPAGITTQIATLYPGQVIIQTPNGVTTAVVGNTSYTVPPSPKTPMTPKVLQ
Ga0209400_100103715F006255GGAMSAELNQLMIEHEEFLESALDDMEYGGELSQEQVDCIRQACGKSKQRKNETLTNLFNDFGVIFGGAK
Ga0209400_10010372F086796N/AMTDYSENYLKIQRLLRSYHNATLKCNYEAATKLAHDLADETIRLEIATIKELKDQWLKS
Ga0209400_100103722F017287N/AMTLNLHNIFAEKSPCDKCDQAKDCKEYEWACRAFSYYVLHGTFHEHTVRQPTHHLFNKIFKEDDKALKNYLKSIKMKEEMAKLCKFKSK
Ga0209400_100103725F016143GGAGMDNEYIYTPVGTDITVRWKLAGWIAPSELPEYLSKWKYYQELPLRKLDDQAKKEYELVMKKAKVARVR
Ga0209400_100103742F037693AGGAGMALVKVTVTCNHCKVDHEEYDATQYDDKEKYLAYWNIPFNTPEAEEAWQAKLNMTPKEAPMVMSDIPGHISMADGTWVDSRSKHRENLKRNGCIELGNDVPMQQKAPEMSRQSQEARKRQIAELAYAKLR
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