Scaffold Ga0209400_1001179

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209400_1001179

Scaffold Ga0209400_1001179

Overview

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1001179 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21783
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037693	Metagenome	167	Y
F053781	Metagenome	140	Y
F085148	Metagenome	111	Y
F096673	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100117927	F096673	N/A	MSFTIYTHDGMKVIQWFFNMDELIKSMQTNYKDHYHRNS
Ga0209400_100117930	F053781	N/A	MSKLKLTEEFLILKLFCKMYEDAMNRKDYTQMLELSVDIAESAEKLEQMTVDHINGH
Ga0209400_100117932	F085148	N/A	MNNFKQQIEYLAHAYIAIAKRERSWNRVKELIERNQNTADAVKNRIKELYARNRPQ
Ga0209400_10011797	F037693	AGGAG	MALVKVTVKCPHCKVDHEEYDATQYDNKEKYLAYWNIPFNTPEAEEAWQAKLNMTPKEAPMVVPDIAGHISMADGTWVSSRSKHRENLKRNNCIELGNDVPTQQKTHEFSRKEHEARKREIAEITYSKLNYR

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