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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027963 Open in IMG/M |
| Scaffold ID | Ga0209400_1001235 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20996 |
| Total Scaffold Genes | 45 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (66.67%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006891 | Metagenome | 362 | Y |
| F007747 | Metagenome / Metatranscriptome | 345 | Y |
| F007911 | Metagenome / Metatranscriptome | 342 | N |
| F009066 | Metagenome | 323 | Y |
| F026867 | Metagenome | 196 | Y |
| F042872 | Metagenome | 157 | Y |
| F044969 | Metagenome | 153 | N |
| F057981 | Metagenome | 135 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209400_100123520 | F042872 | N/A | MKLPIIINQIESGNCTVGSNPTPSDAYRYNDLCRNGNTAVITEPKKAHYQQLNLNSRGGYDLTPEAFVYHPNPAVCRMWHAQHEASK |
| Ga0209400_100123522 | F026867 | GAG | MSSGRLHDTAMKLRQENRALSLRQLGAAYGLGYVRIKQMQALPGFPLIAGKVIPSDFDQWRLMQTGLSSLHRGDRLRSAVGTTRALKSKSDLPISWQRIASNLKAEAWLHELHAGSESSD |
| Ga0209400_100123527 | F009066 | GGAG | VTPEHEKHLAGIVRDLSRDLEAKYRKGQEEHGGALWRRPVWKDAWEEVLDLCTYVHTLKMQLSVIAEIALIGASDESVVAAQSRESCRQILAVLEGFPSAADKK |
| Ga0209400_100123531 | F006891 | N/A | MSTDQIAELSERLSLVRESIARIETRQSVILDLLERSQASLGEYHGRLTNMEREAHTIKTKLWIVALVSGAVFSTIWELLKRRLSF |
| Ga0209400_10012354 | F007747 | AGGAG | MKDLGKITFGKSRPAPKQVLVDVTYDAKTAKAFHAFGLKQLKKDQEAVIEYVITKALEGLVKK |
| Ga0209400_100123540 | F044969 | AGG | MSASLTVDASKLQKAMKAFIGNTKAEASKEMRIQARMLCVSLANSTQPFGLGNDVKKVGEKAVTRDINHVYKSAASASKEIAKLSLPNGKTKTQNAEQMAKALAALVLGKTGGSKRRRTESAQQLLNRIRQQPYVGTQVGPFDGGKHHESARYGKSKRVPKNQFVRQIVTKDNPLARYFKDKRGNVGIAKSGWAVCAGILGGFRGIPKWVYRHTGGGRVNDKSQTGLGTFSKPYVQMTNTIPWINNVISPRTIQKSIDIQVLKMIKRLGIIANYESKKAGL |
| Ga0209400_100123542 | F057981 | N/A | MNEEALLQELDNSLISPDRYFKDQKLAPYTEGSRLLMLQVRDDSDSAIYFVWSFIYLHILLAEDRKKAIRLAWDKDSFREKLMDWIAEMSEEDRNTASIMCSSILSEANKARVNVIPSAIAAPPGNA |
| Ga0209400_100123545 | F007911 | N/A | MPAVTMLDRLIEAAFQELLTTTVTGVTYHLSHDKTENMPPSIVIKATLGTEEPVQGSGVFSVPVEIVVDDSYDDTTLDAHTRKCSKVLQAFYDSSPLATRLNATTAIGSARCYNAKVDSIEPEADDEERTMRRTYKLAVIAQPNSIAS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |