NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1001794

Scaffold Ga0209400_1001794


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1001794 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16790
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (76.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000706Metagenome / Metatranscriptome926Y
F000763Metagenome / Metatranscriptome901Y
F022650Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100179410F022650GGTGGMAAITNLRSTLASALIDNSLWQTFAFPPSVILANSVIVSPDDPYLAPSNNARNTVSPLANFKIIITVPLFDNEGNLNGIETNVVRVFNLLAASSLTYNVGSVSAPSVLNAASGDLLSCEMSVSILTSWS
Ga0209400_100179423F000763AGGAGMNMKNPYLLTAGAFLSAWAASNFAADYRSILWAILAGVFGYATPKR
Ga0209400_100179424F000706N/AMTQGEFFQLYIATIAIIGGLAGYVITHLLSEIKRLNTRVDEIYNILLER
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