NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1002098

Scaffold Ga0209400_1002098


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1002098 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15359
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002149Metagenome / Metatranscriptome589Y
F007467Metagenome / Metatranscriptome350Y
F035221Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100209813F035221N/AMKAITTITLMAMLMASGMADDFAGGVYDSGYAVFSGGKGLAITSNGLIVDNGILKQTPNGCYSSCGDVYYGNGEIVTKSGFLFYGSNGTKVQVGQYYSGTAGSTYVFEDDSE
Ga0209400_100209815F007467N/AMNEKESWDQFEDGLQDTKSFDEAIAWVKANQEIVEKLTIRAMINKFNRDISHANKTWRN
Ga0209400_10020987F002149AGAAGMTAVEYIEQSNVPEAMWPNLAEWFGWFERQGMVGIVRDKDGIAGVALARCIKDGQQPNHYVHSEDGENVFVDLTISSKGAKSLGCLLLLLAERFGHRKRITFNRSGKPRSYDYMSFMRKALR
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