NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1002647

Scaffold Ga0209400_1002647


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1002647 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13432
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007911Metagenome / Metatranscriptome342N
F015449Metagenome / Metatranscriptome254Y
F024499Metagenome / Metatranscriptome205N

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100264710F024499N/AMSEFTECLKESLAALYTQTGTAATIGSTSVTGILSVVSRKENVELGGFDLDLNSTFTIDLTAISSAPTIGSILVANSVSYRVASIDTSIGSYVLGLREV
Ga0209400_10026472F015449GAGMIESFWGTTNIKVAAAAAAYGAKLRPMDPVTRIQKEDGREQVTFWFTDGGEGQDARAEMERTWAEMKSPEDASIRFVRAALENRETLLGLVKRAEKILSIQRGGQTLLVAEKARPELKKALLSRL
Ga0209400_10026474F007911AGGMPAVTMLDRLIEGAFQELLSATVTGQDYHLSHDLTENKPPSIVIKATMGTEEPVQGSGVFSVPVEIILEQSYDDTTLAAHTQKCSKILQAFYDTSSLTARLNATTAIGSARCYNAKLESSEAEADNEERSMKRNFKLAVIAYPNSVAS
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