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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027963 Open in IMG/M |
| Scaffold ID | Ga0209400_1002728 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13215 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (37.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021128 | Metagenome | 220 | N |
| F023326 | Metagenome | 210 | Y |
| F025268 | Metagenome / Metatranscriptome | 202 | N |
| F040160 | Metagenome | 162 | N |
| F058252 | Metagenome | 135 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209400_100272810 | F058252 | GGA | MTTNNTFESRIICEGTEVSESPTKILFGQRFNQCWVRKSDIRVKETLGFLDGEKMIRIVVPEEVANTLELEGILD |
| Ga0209400_10027283 | F025268 | N/A | MSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCAPFRTITDTYCETDSCDSKPEVIQRPGTESYVFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGITTDDGTYCGLVDDGAWYVPEHTLNNEAGYDLCALRVKLAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIIIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINSARFNADTAFNASLGAFNEADPATWARLVRVPRYIKTVLENGCAYIPNRAYRTADFGISVAMVNKAMCKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKTGFYQAQFRLAAQVKDPTIMHSFLHRLPQSKNLYGSCCPVQSYIVPENNQDCYSCAGVGDIVVPS |
| Ga0209400_10027285 | F040160 | N/A | MTTEKVKSLCAAITSHEDWNKLQAYLLLNVNPPEGVTTLIHAIKTIEAIGTEEQGAFKKTKVAGKHKEPADITVDPDLDEG |
| Ga0209400_10027288 | F021128 | AGG | MKLKNKNLAPVGGWYWKYEIKRDNLTFPAIVYGSTWNSLMQNIEKDYRSNGIELPINIEQMVEDQTCQRQPSDRCWYSDGLGDKIAQAIHTVAAVTDKVLGTQLENKARGCSSCNRRRNTLNSLS |
| Ga0209400_10027289 | F023326 | N/A | MSRVFSSNKGVRRYGIQFGENMDDLGIELYCYSISRGEYGKNLCNKQNINLSDFKLLSPHEHFINAVKLQWPTEVSIVNGKYTNTQLLRTLEELCNNQDICLAGAASMGKSFPVGLWIYLDWCAAPHCTSSWVATTTLGASEDRIWGIISKLWKCARVQFGKLIDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRVRLALDELPEMELGAITARVNLSANKDVTFIGIGNPSAGDNPHTRWAMPKGSSNFDSVSPDMDKWETETGVCLFYNGMRSPNFAAPANEPSPFPFLMDRRMQQMMLKQCYGDENAIDYVRNAIGWWPKSGFAQTIITADLIRNADTNEEPLWDSEGFTKVAGFDTAFTIGGDRCVLTIAKLGFVRGTRNRVMWLESQKVIQLSANAAAEFEIQLATEVVGLCRSAGVQPSKFGMDVSGDGGRVGQAIIREWLRFDSMGAAIALISSMGKPTDRIAAEVDKRPCKDVYDRLVSEYYYSCYHAFKSRVLFGIDPASDLARELCLRRYTIKSKKIAIETKDELKGRTGYSPDLSDSLIYALEMARRNGLIFIGNDKPVPTNRFWARDEVSIDTTPDDDYGSDDNGDW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |