Scaffold Ga0209400_1003810

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209400_1003810

Scaffold Ga0209400_1003810

Overview

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1003810 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10876
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (88.24%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010754	Metagenome	299	Y
F055454	Metagenome	138	Y
F075680	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_10038101	F055454	GGAG	MSISASAVLVELNISVWPASKIDREVTSQVNANASAHKDASQTKK
Ga0209400_100381013	F010754	AGG	MSDWKQCRECGDDVHIERWALGYRHCLFCGEEAARTERMSWCVVQEYGKGNYQLVTPASARTTLKQTNQKEIRT
Ga0209400_10038104	F075680	AGGAG	MGYRSNVMAVFYTYEPNEFPAMKLFIDENIPEWFKDEEFMSTFERTDNLQGIKFYLTDVKWYESYSDIQGFEQALKKFEKLADEGNKWYWEFVRLGEEVEDIEERRSYQADGLLHVVRSIECGF

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