NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1004721

Scaffold Ga0209400_1004721


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1004721 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9530
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011649Metagenome288Y
F019450Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100472112F019450AGGAGGMASTSFFYSVYNSQGQFFARFTSYARALRWAVRNGMEWSAEIRKEKEIRK
Ga0209400_10047218F011649N/AMDEISATPSAPEKAKNGREIFTDKIAEEIISACGSGFTIEKAGALVGVNASTIRTWAQRKPDFARKVETARKKHELSLLRDIELAGQKSWQAKAWLAERVYNHAIPSARLQVSQDVTHGISGNLAQLLAGIAGRKKAQVIEAEVIANKPVLPIRDNSYCATDGTQTIVTTTPDKIPRPRKISMRRRKPRAESLAKYTTTPPATPPAP
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