NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1005385

Scaffold Ga0209400_1005385


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1005385 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8805
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011143Metagenome / Metatranscriptome294Y
F020143Metagenome225N

Sequences

Protein IDFamilyRBSSequence
Ga0209400_10053852F011143AGGMHKIEIVKKDGKKITYDLTPSVKVAFEAEFKTGWRKRLGELQMESDLWWFAWRLEKDAGKTDLAFGDDYINQYSDIDLIYDSKNG
Ga0209400_10053854F020143AGGCGGMQPKYSGLPGRTRSLAAVPSIYVENLDELLATMKKIEPDLHKEFRRELTKAVKPVAKLAQSFVPQSPFPGWRDVEPSYPPAWGWANDTAHRGRTIGEGQRSRWKWSQTEVIRGIRVSAAKTKVQRVKGTTFSVTALAVINKSVPGIIYELAGFGTSRSRSRTRRISRNNNASESFIGKLQSTASSSGYKEKRLIYRASQQLGGQVNDNLYGVLKKYLGEKFRG
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