Scaffold Ga0209400_1006785

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209400_1006785

Scaffold Ga0209400_1006785

Overview

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1006785 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7686
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044297	Metagenome / Metatranscriptome	154	Y
F075663	Metagenome / Metatranscriptome	118	Y
F089841	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_10067854	F044297	GAG	MGRMSEISIRLEQFSDDLYNFGIHSEIVIQECKLLCELGFVDEVNCIIHEFENFIMTNEG
Ga0209400_10067856	F089841	AGGAG	MNTIFFSKRHELRENYYVIPFSCSDLMNVDTEVSFRDRTETAQKVIQSVTDRIAKALLNNGYILQGVNFSSMSVSAIIDTKVSSR
Ga0209400_10067857	F075663	GAGG	MTKNETIALIIESIVNEGYKDADAFVTYCTMILPMMSTEELQAELSCLE

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