NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1008871

Scaffold Ga0209400_1008871


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1008871 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6545
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035636Metagenome / Metatranscriptome171Y
F065527Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0209400_10088711F035636N/ALTSVTGAVADAQDMQKNFKPITMDSPEALKEITSFRSFVQLPEERASQQLYQIDPESYKTAVGLGQQYRQLATQPIGPTTTPETEQLRQAIEDEALNQLRLGSTIGAEERRGYEQSIRAAQTARGNIFGLGPAVQEASQIGAAGEQRKLARYGAAQSFLGSGQSTGDALRADIAFRDALRQNRLGAAANFIGGGPSIYNLANQRTAQQQGAFQNYIQANQPLPGGFNQQPSTYQPFFQAVDQQIPVQLTNAFNQLYRSQADYGASTYGAQIGALSRAETGSQAFGNIASGLGNLFSFSKS
Ga0209400_10088715F065527GAGMKAIITMTLMAMLMASGMAEDEGEVSIGDFAGGVLGKSAIITGRNTAVTSDGKFIYSNGRGFATSGGYYGANGKQVFGNGKLVVKSGSFFYGSSSSWKNGNSYFDGTKSSWITGRQRISD
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