NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1009259

Scaffold Ga0209400_1009259


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1009259 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6359
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012328Metagenome / Metatranscriptome281Y
F026827Metagenome / Metatranscriptome196Y
F100336Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100925911F012328AGGAMNRKTNPSEELTWDIAPTPQEPIDIVEEVKQEKLKSKKQIVEDKTILTHPEFDIEGLMTDFPTATDLERFVYDQKGIVLNLKGRANKLKYQVAMDVLNDVVIDPKFTGSDNPYIDRTELVPIDALKIVPERDKSLPLHTEVQNVFYVPTFPHPDEEARAKDMKCHMLFRKYKNGMISYEILGPLQERPVGEKIDKFGRVRPEVIKWFDPRSGEQVVQREDGTLTPTGKKLRGTMQTYRVNKSNQWEVWVDREFISLNDAVKNNPWDLTK
Ga0209400_100925912F100336GGAMNDVRDSVIRQAQQQAKTSDTLIMQKINASHRVAFAEKFPGQCEHILRLLTERLQAGLDKRDGVLIEDASTWKLNPTELKDVSQALEAIYFVHKDLKAS
Ga0209400_10092599F026827AGGAMLNTKNMQAKPINQKRGPTTGNAGTPSKRNEFMDLKSASSSEKATLAKMVTDALEMRGRGTAPTIDPAVEGLARDLPQGPKKNPTANGARLPSKYKSPK
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