NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1009332

Scaffold Ga0209400_1009332


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1009332 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6334
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008296Metagenome335Y
F022871Metagenome212Y
F046331Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100933210F022871AGGAMSESENVWENDEDFWNFVGENKRLVGLQISDGQGLDILNALRDIYVTIEEDPESAMKMLTLLATVIYASSIGEGQQFTDEIQVASAMEQFDSSMKEMLSEEPK
Ga0209400_100933212F008296N/ALKQDAWVDEYELLVSTLASEYYRKYPVTEAEDIRQVLWVWFLTHPVKYTEWSKLPPKDKERLIARSLRNAALKYCEQEKARKVGYDISDLYYYDPSVIEAFLPSIIGNTYEIPSKIKDLNFKFGKSGEVTDGNNWLVLRSDIEKAFNRLTEAKQNILRIKFSVENYEWSDLGKELNTSADGARMKVNRALSSLIKILGGWRTYNEPDIIETKEEGEEHE
Ga0209400_10093325F046331N/AMERPKRSFLFIRTGEQIVSHSEAPISITIKTASGSLVTVRASSGEELDQVVATGLAAITSATTELEQAIRGTVPAPMTVGTIASALGASISPMDNSTATLSGRNCPHGKMTAIQGTGKDGSMYRGYFCGAPKGAFDKCKNVYLKTTDAAWSTFVAEQVK
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