NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1023737

Scaffold Ga0209400_1023737


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1023737 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3535
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003304Metagenome494N
F010983Metagenome / Metatranscriptome296Y
F039993Metagenome / Metatranscriptome162Y
F041081Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0209400_102373710F010983N/AKAAEHGTRMHECMENILLGRAVSTDETLAPYIETFKKWADANIEKTYWCEKALVGAGYAGRCDAYVKLRGVGDAIVDLKNRKVNPKYEPFYDTDCAQIFAYLSASENPKAAGVSIVLASNDPSKIMTKVWDKDELYQAGIAFCAMQKVWSWVKGYTPPGMKL
Ga0209400_10237376F003304AGGAMKQAMVTQSFGEDWQKILDLTRPRMEAYCKRHNCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLITADCPKLSEDAGVFCAFDEGAYLDRKPEMVKLAGAFGGMIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWEIPLTDLDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEAKLVELGR
Ga0209400_10237377F039993N/AMKLALSWICYQIGDLISLTLMRFGYAYSIYNKMMIWSSDLDEHGKIWKDVK
Ga0209400_10237378F041081AGAAGMIMEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYREHYFAEVVNNVTMSKIEISTATEDIKNPSKDLLEKADDLLSIQAAEDFDAGK
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