NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1038486

Scaffold Ga0209400_1038486


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1038486 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2582
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005584Metagenome395Y
F008741Metagenome328Y
F079581Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0209400_10384862F079581N/AMNQTPQFNVEDAIADLLIGVAGLHTYTTNRTGLRFFPFVTISASVNEQMLGNYTGVYDMSVVVNYSDTAAKISQENFDSEYCAIFEAFYSETPTLATKIQNTILDTKIHMARISSQSPSIRANKRAWQRGLTISVICTPSELDDGIRYLDFSEPRNSMYVGVI
Ga0209400_10384864F005584GGAMAGSIDTTYFLSDLSGMIKDLYSSVTGLGSNAVCASVTDLTTATDLDVGGEILRITQSLVVPVSSISAPTIGMLCSVSGVERMVAGFSQSVDGVSYTLELADITT
Ga0209400_10384865F008741N/AMIAKTIKYSQRLGDVLRCLPATKFLADQGHEVFFDCFPQYHSVFDLVSYVKAGSKGDVIDLEIWPNKYEEYRKSKKTWTDFVYSHPEIKGADKTNIILDKLDDRPPKGLPEKYNLVAPFGISQGHYNNPLEIITRARAEMGKENFYVLCPTDIKIQGLDTYTASSVEQMAKAIRGADMFWAINSTPIVLASAVRRDKNTGFFPQKNEWETDNIFDFEGMIKLD
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