Scaffold Ga0209400_1040238

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209400_1040238

Scaffold Ga0209400_1040238

Overview

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1040238 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2510
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003786	Metagenome / Metatranscriptome	468	N
F038230	Metagenome	166	N
F041020	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_10402383	F041020	N/A	MKQTPKEKAKELFNHYYILIQDIGGELGNEILVSILAEQCALFFAMQMQQEKWDEKKYKAHDYWNEVEIEIVNIGMYAM
Ga0209400_10402384	F038230	GGA	MQCKQDRNAYMREYMKKYRATMNEYTYKKIRERENLRLRAKYHAMNREQRQKYIEYQRSYHKLKQFTNE
Ga0209400_10402385	F003786	N/A	MSNLTQYQPRNSDEQAIITARSNRIANMEQKDAYKQTLNVISSVFPMYGIDGDLAFYANIAKEIVKTFGQIAANEIEIAFRMFSAETLELDDDVKFYGKANMHTIGKILNGYMIYRRKIIASHDNEIAALRHQKDMEERGQKEREKLYAEFPTMIKDFAGKTFNDVPLYWYDLCVQFNMIEYEEGEKRQLWEEAQAIALKEPPESLDLMTIRSHAKIIEQGNMKRAVVIAQKLAVWRKVIKKVK

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