Scaffold Ga0209400_1114616

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209400_1114616

Scaffold Ga0209400_1114616

Overview

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1114616 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1229
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007570	Metagenome	348	Y
F017612	Metagenome	239	N
F050211	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_11146162	F017612	GAGG	MSIPDVDVPIGFLYETTLMKYAGGKLTKDGMIMTPEEALEHFKDLAVEEGFAVSTIENSAEELLYDLKDIEEQKYQQYIEEKEXK
Ga0209400_11146163	F050211	GGAG	MTEYKNINLYDVSFCLQDDDGNMLEDKSGKPKLFRYKGDIYSPFDYLQSITEDTTLEMLEEIKXAYQM
Ga0209400_11146165	F007570	GGAG	MNEDITYIKQYIKTFNDRRLREEYNLYTSLEKPTILENYFKDFIRRELDTRGIGIXKLL

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