NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209061_1009375

Scaffold Ga0209061_1009375


Overview

Basic Information
Taxon OID3300027968 Open in IMG/M
Scaffold IDGa0209061_1009375 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6802
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091404Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209061_10093753F091404GAGGMGDPKSGDFRKSVSHPPETTGERKPWMSSGRSMYRYPSERLPIDLCSYTREAIHCFDQGRYLAAIAMASSAIELILNRDRRLRRLEKMKRRGGWVYLNNWNLRIARENGLPTDALLSEGDDLDGDKPIAFVDLRNKVAHGEIAHLVRTLSDYDPGAKELAAAQELKMRKFVSEWFNTAPDVQEGHIQDHRWAD
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