NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209191_1004224

Scaffold Ga0209191_1004224


Overview

Basic Information
Taxon OID3300027969 Open in IMG/M
Scaffold IDGa0209191_1004224 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8354
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002267Metagenome / Metatranscriptome576Y
F004865Metagenome / Metatranscriptome420Y

Sequences

Protein IDFamilyRBSSequence
Ga0209191_10042241F002267AGGAMTGVTALMTSYGGSSLPTLVYDLDAANYSAVPTTGSTVAGAGAHTITVANAGSRLGWSASNGGMFTFTGSGTSTTDTMYGGPNYVTGQSYTVFMAYQRTATRDGRLLNTQSEASKDWLMGLYNGHDQTFYPNFAVNLPSSGADLFWHLDWATWNTSTSLGQIYSATSSSPTGTLFTGTNASGGGFDQLRLFSRASGSEVQTGNIGFVKVYNGVLTLANVQSLYTTYKARFGYP
Ga0209191_100422413F004865AGAAGGMDNRYMIVKYIKKPDGKYDEVTEFKRHYRNTDLQMSKVILDFEKKTVVKNGLNPDAGYDDMLEFYKRVLGDRLTPYLPKD
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