Scaffold Ga0209191_1010458

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209191_1010458

Scaffold Ga0209191_1010458

Overview

Basic Information
Taxon OID	3300027969 Open in IMG/M
Scaffold ID	Ga0209191_1010458 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4934
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017266	Metagenome	241	Y
F019830	Metagenome	227	Y
F023104	Metagenome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_10104582	F023104	GAG	MNIANIRIELKNPFDTWDRFDNLGCVSGRLFGHKAWELEHTYYSPLLLDCEFRWTRGQDHAGVEIGIGVLGYGISFRIYDTRHWDSEQNAYIKTVS
Ga0209191_10104585	F019830	GGAG	MSKRIGPIELDGETADKITYINLKDYRAYLKKELKDWKKNPRTEDNPEGYWLHPEDVTGNIMRIQALNLIIRDFTTNDN
Ga0209191_10104589	F017266	GGA	MQAMAGKYLLTSGRRMGKSYVNSLLQNWYTTMGITYTPKIKWQRLPGLKLQGYTDDVAPRGFERGLNESDMDPIQVWSTECNCGTRMSFNVWKFKNEKHITMFLMKWSS

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