NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209191_1010458

Scaffold Ga0209191_1010458


Overview

Basic Information
Taxon OID3300027969 Open in IMG/M
Scaffold IDGa0209191_1010458 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4934
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017266Metagenome241Y
F019830Metagenome227Y
F023104Metagenome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0209191_10104582F023104GAGMNIANIRIELKNPFDTWDRFDNLGCVSGRLFGHKAWELEHTYYSPLLLDCEFRWTRGQDHAGVEIGIGVLGYGISFRIYDTRHWDSEQNAYIKTVS
Ga0209191_10104585F019830GGAGMSKRIGPIELDGETADKITYINLKDYRAYLKKELKDWKKNPRTEDNPEGYWLHPEDVTGNIMRIQALNLIIRDFTTNDN
Ga0209191_10104589F017266GGAMQAMAGKYLLTSGRRMGKSYVNSLLQNWYTTMGITYTPKIKWQRLPGLKLQGYTDDVAPRGFERGLNESDMDPIQVWSTECNCGTRMSFNVWKFKNEKHITMFLMKWSS

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