Basic Information | |
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Taxon OID | 3300027969 Open in IMG/M |
Scaffold ID | Ga0209191_1026768 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2804 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (27.27%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001923 | Metagenome / Metatranscriptome | 617 | Y |
F003583 | Metagenome / Metatranscriptome | 478 | Y |
F003714 | Metagenome / Metatranscriptome | 472 | Y |
F005588 | Metagenome / Metatranscriptome | 395 | Y |
F019449 | Metagenome / Metatranscriptome | 229 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209191_10267684 | F005588 | N/A | MPDPSHRPYKPMTIIRPNSKPPFWWLVPWAYARTLHMSANALKAYADRLEDMLDLQRRTIAKQSADIKLLQARVRDQDDAIIKGTAINPDAYPHE |
Ga0209191_10267685 | F003714 | N/A | MPNANHPYTDTVTFAGRVLPLKRPMASFAARRLQAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDMTGTTWVNVRRRGPYSSRNA |
Ga0209191_10267687 | F003583 | AGG | MAKAKPQLKESGSANLLLAVCLLTGFAGLSAFASAYIAGYVLDILQSRDALVMIVTDAGIKSDSVSVEQGLSAATIALKAVRDLGWALAVGCLGVGVAVFLRSRRQKAS |
Ga0209191_10267688 | F001923 | N/A | MSPPPPPIDPESFPKELKDGVIASILGGLAMTARLLLSTEPVSLGWVVRRVLAAAITAALVGYAITDHIQSPGLKMAVVGASGYTAPECLDYLMKYIKARGEKEVAKVTGKPNGKSKAPVKGKRKR |
Ga0209191_10267689 | F019449 | N/A | MTTEFFTTIVVPGIASAAYLSASIACFCVGRPALGTMWACYSLGNIMLLLTVLRK |
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